Stem-loop gga-mir-1788

Accession

MI0007531

Description

Gallus gallus gga-mir-1788 precursor miRNA

Gene family

MIPF0000792; mir-1788

Literature search

1 open access papers mention gga-mir-1788
(3 sentences)

Sequence

2 reads, 0 reads per million, 1 experiments

ccacccugcugugucccgGGCUUGUUUUCCGUUGCCUGCGguguguugcagugacuCAGGCAGCGAAAGCAAGUCUGggaggcugugg
.....((((.((.((((((((((((((((.((((((((((.(((...))).))...)))))))))))))))))))))))).)).))))

Structure

ccacc    u  g                C        ---  g   g 
     cugc gu ucccgGGCUUGUUUUC GUUGCCUG   CG ugu  
     |||| || |||||||||||||||| ||||||||   || ||| u
     ggug cg aggGUCUGAACGAAAG CGACGGAC   gu acg  
-----    u  g                -        uca  g   u 

Annotation confidence Not enough data

Genome context

chr7: 22479317-22479404 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1788

Mature gga-miR-1788-5p

• Accession: MIMAT0007700
• Description: Gallus gallus gga-miR-1788-5p mature miRNA
• Sequence: 19 - GGCUUGUUUUCCGUUGCCUGCG - 40
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1788-3p

• Accession: MIMAT0007701
• Description: Gallus gallus gga-miR-1788-3p mature miRNA
• Sequence: 57 - CAGGCAGCGAAAGCAAGUCUG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964