Stem-loop sequence gga-mir-1788

Accession

MI0007531 (change log)

Description

Gallus gallus miR-1788 stem-loop

Gene family

MIPF0000792; mir-1788

Literature search

1 open access papers mention gga-mir-1788
(3 sentences)

Stem-loop

   ccacc ug u  g                c        ---  g  u 
5'      c  c gu ucccgggcuuguuuuc guugccug   cg ug g
        |  | || |||||||||||||||| ||||||||   || || u
3'      g  g cg agggucugaacgaaag cgacggac   gu ac u
   ----- gu u  g                -        uca  g  g 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr7: 22479317-22479404 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-1788

• gga-mir-375: chr7: 22469940-22470004 [+]
• gga-mir-1788: chr7: 22479317-22479404 [+]

Database links

• EntrezGene:MIR1788
• miRBase Tracker:MI0007531

Mature sequence gga-miR-1788-5p

• Accession: MIMAT0007700
• Sequence: 19 - ggcuuguuuuccguugccugcg - 40
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1788-5p
  • miRDB:gga-miR-1788-5p

Mature sequence gga-miR-1788-3p

• Accession: MIMAT0007701
• Sequence: 57 - caggcagcgaaagcaagucug - 77
• Deep sequencing: 4 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1788-3p
  • miRDB:gga-miR-1788-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).