Stem-loop sequence gga-mir-1788

AccessionMI0007531 (change log)
DescriptionGallus gallus miR-1788 stem-loop
Gene family MIPF0000792; mir-1788
Literature search

1 open access papers mention gga-mir-1788
(3 sentences)

   ccacc ug u  g                c        ---  g  u 
5'      c  c gu ucccgggcuuguuuuc guugccug   cg ug g
        |  | || |||||||||||||||| ||||||||   || || u
3'      g  g cg agggucugaacgaaag cgacggac   gu ac u
   ----- gu u  g                -        uca  g  g 
Get sequence
Deep sequencing
7 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr7: 22479317-22479404 [+]
Clustered miRNAs
< 10kb from gga-mir-1788
gga-mir-375chr7: 22469940-22470004 [+]
gga-mir-1788chr7: 22479317-22479404 [+]
Database links

Mature sequence gga-miR-1788-5p

Accession MIMAT0007700

19 - 


 - 40

Get sequence
Deep sequencing2 reads, 1 experiments
Evidence experimental; Illumina [1]
Predicted targets

Mature sequence gga-miR-1788-3p

Accession MIMAT0007701

57 - 


 - 77

Get sequence
Deep sequencing4 reads, 1 experiments
Evidence experimental; Illumina [1]
Predicted targets


PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).