Stem-loop sequence gga-mir-1798

Accession

MI0007542 (change log)

Description

Gallus gallus miR-1798 stem-loop

Literature search

2 open access papers mention gga-mir-1798
(4 sentences)

Stem-loop

        aauuagu       aguu     g       a       uguaau 
5' cucau       uuuauuc    aacgu acacuuu gaaaacc      g
   |||||       |||||||    ||||| ||||||| |||||||      c
3' gagug       aaauagg    uugcg ugugaag cuuuugg      u
        -------       guau     a       a       ugaaua 

Deep sequencing

28 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr20: 9880673-9880768 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000009881 ; intron 18

Database links

• EntrezGene:MIR1798
• miRBase Tracker:MI0007542

Mature sequence gga-miR-1798-5p

• Accession: MIMAT0007713
• Previous IDs: gga-miR-1798*
• Sequence: 24 - aacgugacacuuuagaaaac - 43
• Deep sequencing: 24 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1798-5p
  • miRDB:gga-miR-1798-5p

Mature sequence gga-miR-1798-3p

• Accession: MIMAT0007714
• Previous IDs: gga-miR-1798
• Sequence: 59 - ugguuuucagaaguguagcguu - 80
• Deep sequencing: 4 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1798-3p
  • miRDB:gga-miR-1798-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).