Stem-loop gga-mir-10a

Accession

MI0007559

Description

Gallus gallus gga-mir-10a precursor miRNA

Literature search

19 open access papers mention gga-mir-10a
(44 sentences)

Sequence

1127191 reads, 15923 reads per million, 5 experiments

cuauaugUACCCUGUAGAUCCGAAUUUGUguaaaggaaguugggucacAAAUUCGUAUCUAGGGGAAUAuguag
((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))

Structure

        A    G     C          uaaagg 
cuauaugU CCCU UAGAU CGAAUUUGUg      a
|||||||| |||| ||||| ||||||||||      a
gauguAUA GGGG AUCUA GCUUAAAcac      g
        A    -     U          uggguu 

Annotation confidence Medium

Genome context

chr27: 3834170-3834243 [+]

Mature gga-miR-10a-5p

• Accession: MIMAT0007731
• Description: Gallus gallus gga-miR-10a-5p mature miRNA
• Sequence: 8 - UACCCUGUAGAUCCGAAUUUGU - 29
• Evidence: experimental ; Illumina [1], cloned [2]

Mature gga-miR-10a-3p

• Accession: MIMAT0007732
• Description: Gallus gallus gga-miR-10a-3p mature miRNA
• Sequence: 49 - AAAUUCGUAUCUAGGGGAAUA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964