miRBase entry: gga-mir-10a

Stem-loop gga-mir-10a


Accession
MI0007559
Description
Gallus gallus gga-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
19 open access papers mention gga-mir-10a
(44 sentences)

Sequence

1127193 reads, 15999 reads per million, 5 experiments
cuauaugUACCCUGUAGAUCCGAAUUUGUguaaaggaaguugggucacAAAUUCGUAUCUAGGGGAAUAuguag
((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))

Structure
        A    G     C          uaaagg 
cuauaugU CCCU UAGAU CGAAUUUGUg      a
|||||||| |||| ||||| ||||||||||      a
gauguAUA GGGG AUCUA GCUUAAAcac      g
        A    -     U          uggguu 


Annotation confidence High
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Genome context
chr27: 3834170-3834243 [+]

Database links

Mature gga-miR-10a-5p

Accession MIMAT0007731
Description Gallus gallus gga-miR-10a-5p mature miRNA
Sequence 8 - UACCCUGUAGAUCCGAAUUUGU - 29
Evidence experimental
Illumina [1], cloned [2]
Database links
Predicted targets

Mature gga-miR-10a-3p

Accession MIMAT0007732
Description Gallus gallus gga-miR-10a-3p mature miRNA
Sequence 49 - AAAUUCGUAUCUAGGGGAAUA - 69
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40

  2. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964