miRBase entry: gga-mir-146c

Stem-loop gga-mir-146c


Accession
MI0007561
Description
Gallus gallus gga-mir-146c precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
14 open access papers mention gga-mir-146c
(28 sentences)

Sequence

1850464 reads, 28908 reads per million, 5 experiments
gaagaugugacgaaucuuggcaguucccagcucUGAGAACUGAAUUCCAUGGACUGguuucaauuccaugcguucAGUCCAUGGUAUUCAGUUCUCUagcuuggcugcaucaaacuucacaacugcuaa
..((.(((((.........((((((...((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))).))))))........))))).)).....

Structure
---ga  a     cgaaucuug      ccc    cU           U           uuu  au 
     ag uguga         gcaguu   agcu  GAGAACUGAAU CCAUGGACUGg   ca  u
     || |||||         ||||||   ||||  ||||||||||| |||||||||||   ||   
     uc acacu         cgucgg   ucga  CUCUUGACUUA GGUACCUGAcu   gu  c
aaucg  a     -ucaaacua      --u    -U           U           ugc  ac 


Annotation confidence High
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Genome context
chr4: 89315822-89315950 [-]

Database links

Mature gga-miR-146c-3p

Accession MIMAT0007736
Description Gallus gallus gga-miR-146c-3p mature miRNA
Sequence 76 - AGUCCAUGGUAUUCAGUUCUCU - 97
Evidence experimental
Illumina [1]

Mature gga-miR-146c

Accession MIMAT0007735
Description Gallus gallus gga-miR-146c mature miRNA
Sequence 34 - UGAGAACUGAAUUCCAUGGACUG - 56
Evidence

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964