Stem-loop sequence gga-mir-146c

Accession

MI0007561 (change log)

Previous IDs

gga-mir-146c;gga-mir-146c-1

Description

Gallus gallus miR-146c stem-loop

Gene family

MIPF0000103; mir-146

Literature search

14 open access papers mention gga-mir-146c
(28 sentences)

Stem-loop

   ---ga  a     cgaaucuug    uu  c    cu           u           uuu  au 
5'      ag uguga         gcag  cc agcu  gagaacugaau ccauggacugg   ca  u
        || |||||         ||||  || ||||  ||||||||||| |||||||||||   ||   
3'      uc acacu         cguc  gg ucga  cucuugacuua gguaccugacu   gu  c
   aaucg  a     -ucaaacua    --  u    -u           u           ugc  ac 

Deep sequencing

3532431 reads, 5.29e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 89315822-89315950 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000025785 ; DDRGK1-201; intron 7

Database links

• EntrezGene:MIR146C
• RNAcentral:URS000075BF1D_9031
• miRBase Tracker:MI0007561

Mature sequence gga-miR-146c

• Accession: MIMAT0007735
• Sequence: 34 - ugagaacugaauuccauggacug - 56
• Deep sequencing: 7062106 reads, 5 experiments
• Evidence: experimental

Mature sequence gga-miR-146c-3p

• Accession: MIMAT0007736
• Previous IDs: gga-miR-146c*
• Sequence: 76 - aguccaugguauucaguucucu - 97
• Deep sequencing: 1378 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-146c-3p
  • miRDB:gga-miR-146c-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).