Stem-loop sequence gga-mir-15c

Accession

MI0007562 (change log)

Description

Gallus gallus miR-15c stem-loop

Gene family

MIPF0000006; mir-15

Literature search

14 open access papers mention gga-mir-15c
(41 sentences)

Stem-loop

   u    a    ua     a  uc          gggac 
5'  gagg gaug  gcagc ca  augguuugua     a
    |||| ||||  ||||| ||  ||||||||||      
3'  cucc uuac  cgucg gu  uaccagacau     a
   a    a    uc     g  cu          agagg 

Deep sequencing

11571 reads, 20 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 4071811-4071886 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000041417 ; gga-mir-15c-201; exon 1

Clustered miRNAs

< 10kb from gga-mir-15c

• gga-mir-15c: chr4: 4071811-4071886 [-]
• gga-mir-16c: chr4: 4071445-4071515 [-]

Database links

• EntrezGene:MIR15C
• miRBase Tracker:MI0007562

Mature sequence gga-miR-15c-5p

• Accession: MIMAT0007737
• Previous IDs: gga-miR-15c
• Sequence: 11 - uagcagcacaucaugguuugua - 32
• Deep sequencing: 11566 reads, 5 experiments
• Evidence: experimental; Illumina [1], Northern [2]
• Predicted targets:
  • TargetScanVert:gga-miR-15c-5p
  • miRDB:gga-miR-15c-5p

Mature sequence gga-miR-15c-3p

• Accession: MIMAT0007738
• Previous IDs: gga-miR-15c*
• Sequence: 47 - cagaccauucugggcugccuca - 68
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-15c-3p
  • miRDB:gga-miR-15c-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).
2. PMID:18511220 "Identification of novel chicken microRNAs and analysis of their genomic organization" Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH Gene. 418:34-40(2008).