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miRBase |
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Stem-loop sequence gga-mir-193a |
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Accession | MI0007564 (change log) | ||||
Description | Gallus gallus miR-193a stem-loop | ||||
Gene family | MIPF0000082; mir-193 | ||||
Literature search |
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5 open access papers mention gga-mir-193a | ||||
Stem-loop |
u cg g a - g u 5' agcugagggcuggg cuuug ggc ag uga ga g u |||||||||||||| ||||| ||| || ||| || | 3' ucggcucuugaccc gaaac ccg uc acu cu u c u au g a u g g |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (J_AD0537A21_t807e807.b2). |
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Genome context |
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Database links |
Mature sequence gga-miR-193a-5p |
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Accession | MIMAT0026787 |
Sequence |
11 - ugggucuuugcgggcgagauga - 32 |
Deep sequencing | 3053 reads, 5 experiments |
Evidence | experimental; Illumina [3] |
Predicted targets |
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Mature sequence gga-miR-193a-3p |
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Accession | MIMAT0007740 |
Sequence |
48 - aacuggccuacaaagucccagu - 69 |
Deep sequencing | 378 reads, 5 experiments |
Evidence | experimental; Illumina [1,3], cloned [2], Northern [2] |
Predicted targets |
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References |
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1 |
PMID:18469162
"A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
Genome Res. 18:957-964(2008).
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2 |
PMID:18511220
"Identification of novel chicken microRNAs and analysis of their genomic organization"
Gene. 418:34-40(2008).
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3 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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