Stem-loop gga-mir-301b

Accession

MI0007565

Description

Gallus gallus gga-mir-301b precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

5 open access papers mention gga-mir-301b
(7 sentences)

Sequence

6116 reads, 78 reads per million, 5 experiments

guugcugcuaacgaauGCUCUGACUUUAUUGCACUACUguacuucacagcuagCAGUGCAAUAGUAUUGUCAAAGCAUcugaaagcagag
....(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))..

Structure

guug     aa  a     C    ---U          A  -  acu 
    cugcu  cg auGCU UGAC    UUAUUGCACU CU gu   u
    |||||  || ||||| ||||    |||||||||| || ||    
    gacga  gu UACGA ACUG    GAUAACGUGA ga cg   c
--ga     aa  c     A    UUAU          C  u  aca 

Annotation confidence High

Genome context

chr19: 7202692-7202781 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-301b

Mature gga-miR-301b-5p

• Accession: MIMAT0007741
• Description: Gallus gallus gga-miR-301b-5p mature miRNA
• Sequence: 17 - GCUCUGACUUUAUUGCACUACU - 38
• Evidence: experimental ; Illumina [1]

Mature gga-miR-301b-3p

• Accession: MIMAT0007742
• Description: Gallus gallus gga-miR-301b-3p mature miRNA
• Sequence: 54 - CAGUGCAAUAGUAUUGUCAAAGCAU - 78
• Evidence: experimental ; Illumina [1], Northern [2]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964