miRBase entry: gga-mir-449b

Stem-loop gga-mir-449b


Accession
MI0007566
Description
Gallus gallus gga-mir-449b precursor miRNA
Gene family
MIPF0000133; mir-449

Literature search
4 open access papers mention gga-mir-449b
(8 sentences)

Sequence

5 reads, 3 reads per million, 2 experiments
ccuguggcuggaAGGCAGUGUGCUGUUAGCGGCUGcugugcugaauggagCAGUCACUACCACACUGCCACcugcugcagggauagacuacugc
((((((((.((..(((((((((..((.((.(((((((.(.......).))))))).))))))))))))).)).)))))))).............

Structure
-------------        u  aA         CU  U  C       g gc 
             ccuguggc gg  GGCAGUGUG  GU AG GGCUGcu u  u
             |||||||| ||  |||||||||  || || ||||||| |  g
             ggacgucg cC  CCGUCACAC  CA UC CUGACga g  a
cgucaucagauag        u  -A         --  -  A       g ua 


Annotation confidence Not enough data
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Genome context
chrZ: 16703096-16703189 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-449b-5p

Accession MIMAT0007743
Description Gallus gallus gga-miR-449b-5p mature miRNA
Sequence 13 - AGGCAGUGUGCUGUUAGCGGCUG - 35
Evidence experimental
Illumina [1]

Mature gga-miR-449b-3p

Accession MIMAT0007744
Description Gallus gallus gga-miR-449b-3p mature miRNA
Sequence 51 - CAGUCACUACCACACUGCCAC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964