miRBase entry: mml-mir-10b

Stem-loop mml-mir-10b


Accession
MI0007588
Description
Macaca mulatta mml-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention mml-mir-10b
(4 sentences)

Sequence

2407464 reads, 25697 reads per million, 9 experiments
ccagagguuguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUGugguauccauauagucacAGAUUCGAUUCUAGGGGAAUAuauggucgaugcaaaaacuuca
...((((((....(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))....)))))).

Structure
cca      guaa     u        A    G     C          u g   c 
   gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUG g uau c
   ||||||    ||||| |||||||| |||| ||||| |||||||||| | |||  
   cuucaa    guagc gguauAUA GGGG AUCUU GCUUAGAcac u aua a
--a      aaac     u        A    -     A          - g   u 


Annotation confidence Not enough data
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Genome context
chr12: 63173247-63173356 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-10b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-10b-5p

Accession MIMAT0006162
Description Macaca mulatta mml-miR-10b-5p mature miRNA
Sequence 27 - UACCCUGUAGAACCGAAUUUGUG - 49
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-10b-3p

Accession MIMAT0026798
Description Macaca mulatta mml-miR-10b-3p mature miRNA
Sequence 68 - AGAUUCGAUUCUAGGGGAAUA - 88
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45