miRBase entry: mml-mir-500a

Stem-loop mml-mir-500a


Accession
MI0007774
Description
Macaca mulatta mml-mir-500a precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

4988 reads, 81 reads per million, 9 experiments
gcucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcuaucugaaugcaAUGCACCUGGGCAAGGAUUCUGAgagcgagagc
((((.(.(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).).))))

Structure
    c c     -U         UAC       AGAg   uau 
gcuc c cucuc  AAUCCUUGC   CUGGGUG    ugc   c
|||| | |||||  |||||||||   |||||||    |||   u
cgag g gagAG  UUAGGAACG   GGUCCAC    acg   g
    a c     UC         ---       -GUA   uaa 


Annotation confidence High
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Genome context
chrX: 50013494-50013577 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from mml-mir-500a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-500a-5p

Accession MIMAT0006363
Description Macaca mulatta mml-miR-500a-5p mature miRNA
Sequence 13 - UAAUCCUUGCUACCUGGGUGAGA - 35
Evidence experimental
Illumina [2]

Mature mml-miR-500a-3p

Accession MIMAT0026888
Description Macaca mulatta mml-miR-500a-3p mature miRNA
Sequence 52 - AUGCACCUGGGCAAGGAUUCUGA - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45