miRBase entry: mml-mir-539

Stem-loop mml-mir-539


Accession
MI0007815
Description
Macaca mulatta mml-mir-539 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

1333 reads, 14 reads per million, 9 experiments
auacuugaGGAGAAAUUAUCCUUGGUGUGUucgcuuuauuuaugaugaaucauacaaggacaauuucuuuuugaguau
(((((((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))))))))

Structure
                 A      G    -    - uuu 
auacuugaGGAGAAAUU UCCUUG UGUG Uucg c   a
||||||||||||||||| |||||| |||| |||| |   u
uaugaguuuuucuuuaa aggaac auac aagu g   u
                 c      -    u    a uau 


Annotation confidence Not enough data
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Genome context
chr7: 163381316-163381393 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from mml-mir-539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-539

Accession MIMAT0006405
Description Macaca mulatta mml-miR-539 mature miRNA
Sequence 9 - GGAGAAAUUAUCCUUGGUGUGU - 30
Evidence not_experimental

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8