miRBase entry: mml-mir-542

Stem-loop mml-mir-542


Accession
MI0007816
Description
Macaca mulatta mml-mir-542 precursor miRNA
Gene family
MIPF0000185; mir-542


Sequence

11203 reads, 248 reads per million, 9 experiments
cagaccucagacaucUCGGGGAUCAUCAUGUCACGAGAuaccacugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagccauucaucuuca
.....(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))...............

Structure
----------cagac       auc    GG    UCA         -A   c 
               cucagac   UCGG  AUCA   UGUCACGAG  uac a
               |||||||   ||||  ||||   |||||||||  |||  
               gggucug   AGUC  UAGU   ACAGUGUuc  gug c
acuucuacuuaccga       gAA    AA    UAG         ac   u 


Annotation confidence High
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Genome context
chrX: 128513131-128513227 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mml-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-542-5p

Accession MIMAT0006406
Description Macaca mulatta mml-miR-542-5p mature miRNA
Sequence 16 - UCGGGGAUCAUCAUGUCACGAGA - 38
Evidence not_experimental

Mature mml-miR-542-3p

Accession MIMAT0006407
Description Macaca mulatta mml-miR-542-3p mature miRNA
Sequence 53 - UGUGACAGAUUGAUAACUGAAA - 74
Evidence not_experimental

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8