miRBase entry: mml-mir-550

Stem-loop mml-mir-550


Accession
MI0007826
Description
Macaca mulatta mml-mir-550 precursor miRNA
Gene family
MIPF0000334; mir-550


Sequence

11 reads, 3 reads per million, 5 experiments
ugaugcuuugcuggcuggugcAGUGCCUGAGGGGGUAAGAGCCCuguuguuguaagauaguguCUUACUCCCUCAGGCACAUCuccagcaagu
.........(((.(((((.(..((((((((((((((((((.(.(((((.......))))).)))))))))))))))))))..).))))).)))

Structure
ugaugcuuu   g     u cA                  G C     gu 
         gcu gcugg g  GUGCCUGAGGGGGUAAGA C Cuguu  u
         ||| ||||| |  |||||||||||||||||| | |||||  g
         uga cgacc C  CACGGACUCCCUCAUUCu g gauag  u
---------   a     u UA                  - u     aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 78421474-78421566 [+]

Database links

Mature mml-miR-550-5p

Accession MIMAT0006418
Description Macaca mulatta mml-miR-550-5p mature miRNA
Sequence 22 - AGUGCCUGAGGGGGUAAGAGCCC - 44
Evidence experimental
Illumina [2]

Mature mml-miR-550-3p

Accession MIMAT0026897
Description Macaca mulatta mml-miR-550-3p mature miRNA
Sequence 64 - CUUACUCCCUCAGGCACAUC - 83
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45