miRBase entry: vvi-MIR169b

Stem-loop vvi-MIR169b


Accession
MI0007940
Description
Vitis vinifera vvi-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
8 open access papers mention vvi-MIR169b
(16 sentences)

Sequence

57 reads, 4 reads per million, 2 experiments
ggggucgaauUGAGCCAAGGAUGGCUUGCCGucaucugcagcaagaguuggagacuuuuaacugugcgugcacgguuagucauccuuggcucauuuggcccuucu
((((((((((.(((((((((((((((.((((((((.(((((.(((((((...)))))))..))))).))).))))).)))))))))))))))))))))))))...

Structure
---          U               U     -   c     -c       g 
   ggggucgaau GAGCCAAGGAUGGCU GCCGu cau ugcag  aagaguu  
   |||||||||| ||||||||||||||| ||||| ||| |||||  ||||||| g
   ucccgguuua cucgguuccuacuga uggca gug guguc  uuuucag  
ucu          -               u     c   c     aa       a 


Annotation confidence Not enough data
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Genome context
chr11: 16265437-16265541 [+]

Database links

Mature vvi-miR169b

Accession MIMAT0006545
Description Vitis vinifera vvi-miR169b mature miRNA
Sequence 11 - UGAGCCAAGGAUGGCUUGCCG - 31
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558