miRBase entry: vvi-MIR319e

Stem-loop vvi-MIR319e


Accession
MI0007951
Description
Vitis vinifera vvi-MIR319e precursor miRNA
Gene family
MIPF0001104; MIR319

Literature search
7 open access papers mention vvi-MIR319e
(27 sentences)

Sequence

38 reads, 3 reads per million, 2 experiments
ugcagaaauggggguuccuuugcagcccaaaacaacuccaucgcugaagaagaugaugaacuucaugcuccuuguUUUGGACUGAAGGGAGCUCCUaguucuucucu
...((((.(((((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))))))))))).)))).....

Structure
--ugc    a             g   c         cuccauc  -     aaga 
     agaa uggggguuccuuu cag ccaaaacaa       gc ugaag    u
     |||| ||||||||||||| ||| |||||||||       || |||||    g
     ucuu aUCCUCGAGGGAA GUC GGUUUuguu       cg acuuc    a
ucucu    g             -   A         ----ccu  u     aagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr11: 4317224-4317330 [+]

Database links

Mature vvi-miR319e

Accession MIMAT0006556
Description Vitis vinifera vvi-miR319e mature miRNA
Sequence 76 - UUUGGACUGAAGGGAGCUCCU - 96
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558