Stem-loop vvi-MIR399d

Accession

MI0007961

Description

Vitis vinifera vvi-MIR399d precursor miRNA

Literature search

4 open access papers mention vvi-MIR399d
(10 sentences)

Sequence

3 reads, 0 reads per million, 2 experiments

guaaauuauagagcagauuucuuuuggcagauggcgaucacaagccaaugugcucaaagggcauugagugugucUGCCAAAGGAGAUUUGCUCGUgaauuuaacu
.((((((...(((((((((((((((((((((((((........))).....((((((......))))))..))))))))))))))))))))))...))))))...

Structure

--g      aua                      ggcgaucacaagccaaugu      ag 
   uaaauu   gagcagauuucuuuuggcagau                   gcucaa  g
   ||||||   ||||||||||||||||||||||                   ||||||   
   auuuaa   CUCGUUUAGAGGAAACCGUcug                   ugaguu  g
uca      gUG                      -----------------ug      ac 

Annotation confidence Not enough data

Genome context

chr10: 2988021-2988125 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from vvi-MIR399d

Mature vvi-miR399d

• Accession: MIMAT0006566
• Description: Vitis vinifera vvi-miR399d mature miRNA
• Sequence: 75 - UGCCAAAGGAGAUUUGCUCGU - 95
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467