miRBase entry: vvi-MIR399i

Stem-loop vvi-MIR399i


Accession
MI0007963
Description
Vitis vinifera vvi-MIR399i precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention vvi-MIR399i
(10 sentences)

Sequence

180 reads, 12 reads per million, 2 experiments
aguaguuguagggcuucucuccuucuggcaggagauggcaauagauuauccuuuguggcuuaucuccgguguugauuaacuuccaaugaccCGCCAAAGGAGAGUUGCCCUGugacuacuuc
((((((((((((((..((((((((.((((.(((((((((.(((((......))))).)).)))))))(((((((.........)))).))).))))))))))))..))))))))))))))..

Structure
--              uu        c    ------------------------a       -  a     uu 
  aguaguuguagggc  cucuccuu uggc                         ggagaug gc auaga  a
  ||||||||||||||  |||||||| ||||                         ||||||| || |||||   
  ucaucaguGUCCCG  GAGAGGAA ACCG                         ccucuau cg uguuu  u
cu              UU        -    Cccaguaaccuucaauuaguugugg       u  g     cc 


Annotation confidence Not enough data
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Genome context
chr2: 4101801-4101922 [+]

Database links

Mature vvi-miR399i

Accession MIMAT0006568
Description Vitis vinifera vvi-miR399i mature miRNA
Sequence 92 - CGCCAAAGGAGAGUUGCCCUG - 112
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558