miRBase entry: vvi-MIR403c

Stem-loop vvi-MIR403c


Accession
MI0007966
Description
Vitis vinifera vvi-MIR403c precursor miRNA
Gene family
MIPF0000290; MIR403

Literature search
2 open access papers mention vvi-MIR403c
(5 sentences)

Sequence

309 reads, 21 reads per million, 2 experiments
gcacaucucaaguuugugcgugaaucaaaccccaucguagccguccauaucuucggguacuaaucacggggcgauucgacgccgUUAGAUUCACGCACAAACUCGugaucugucc
(((.(((.(.((((((((((((((((.(((......(((.(((..........))).))).........((((......))))))).)))))))))))))))).).))).)))..

Structure
--   c   u a                a   -----------------cccauc   g   ucca 
  gca auc c aguuugugcgugaauc aac                       gua ccg    u
  ||| ||| | |||||||||||||||| |||                       ||| |||     
  ugu uag G UCAAACACGCACUUAG UUg                       cau ggc    a
cc   c   u C                A   ccgcagcuuagcggggcacuaau   g   uucu 


Annotation confidence Not enough data
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Genome context
chr5: 602611-602725 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from vvi-MIR403c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature vvi-miR403c

Accession MIMAT0006571
Description Vitis vinifera vvi-miR403c mature miRNA
Sequence 85 - UUAGAUUCACGCACAAACUCG - 105
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558