miRBase entry: vvi-MIR403e

Stem-loop vvi-MIR403e


Accession
MI0007968
Description
Vitis vinifera vvi-MIR403e precursor miRNA
Gene family
MIPF0000290; MIR403

Literature search
2 open access papers mention vvi-MIR403e
(5 sentences)

Sequence

308 reads, 21 reads per million, 2 experiments
gcacaucucaaguuugugcgugaaucaaaccccaucguagccguccauaucuucguguacuaaucacggggcgauucgacgccgUUAGAUUCACGCACAAACUCGcgaucugucc
(((.(((.(.((((((((((((((((.(((..(.(((.((.(((((.......((((.......))))))))).))))).)..))).)))))))))))))))).).))).)))..

Structure
--   c   u a                a   cc a   u  c     auaucuu    ua 
  gca auc c aguuugugcgugaauc aac  c ucg ag cgucc       cgug  c
  ||| ||| | |||||||||||||||| |||  | ||| || |||||       ||||  u
  ugu uag G UCAAACACGCACUUAG UUg  g agc uu gcggg       gcac  a
cc   c   c C                A   cc c   -  a     -------    ua 


Annotation confidence Not enough data
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Genome context
chr5: 168099-168213 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from vvi-MIR403e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature vvi-miR403e

Accession MIMAT0006573
Description Vitis vinifera vvi-miR403e mature miRNA
Sequence 85 - UUAGAUUCACGCACAAACUCG - 105
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558