Stem-loop vvi-MIR828a

Accession

MI0007972

Description

Vitis vinifera vvi-MIR828a precursor miRNA

Gene family

MIPF0000544; MIR828

Literature search

5 open access papers mention vvi-MIR828a
(10 sentences)

Sequence

71 reads, 6 reads per million, 2 experiments

uauaaaguuUCUUGCUCAAAUGAGUAUUCCAaacaacagcuugugaagcaaugauuacugucauagucucugcauguggauuguuguugagaugcucauuugaggaagcaaccuuaaaaaug
..(((.(((.(((.((((((((((((((.(((.(((((((((((((.((.(((((....))))).)).)).)))...)).))))))))).)))))))))))))).))).))).)))......

Structure

----ua   a   U   G              C   a      -  ---   -  a  a     u 
      uaa guu CUU CUCAAAUGAGUAUU CAa caacag cu   ugu ga gc augau a
      ||| ||| ||| |||||||||||||| ||| |||||| ||   ||| || || |||||  
      auu caa gaa gaguuuacucguag guu guuguu gg   acg cu ug uacug c
guaaaa   c   c   g              a   -      a  ugu   u  c  a     u 

Annotation confidence Not enough data

Genome context

chr16: 21724308-21724429 [+]

Mature vvi-miR828a

• Accession: MIMAT0006577
• Description: Vitis vinifera vvi-miR828a mature miRNA
• Sequence: 10 - UCUUGCUCAAAUGAGUAUUCCA - 31
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467