miRBase entry: cfa-mir-99b

Stem-loop cfa-mir-99b


Accession
MI0008003
Description
Canis familiaris cfa-mir-99b precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

CACCCGUAGAACCGACCUUGCGgggccuucgccgcacacaagcucgagucugugggucug
.(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))...

Structure
--C         AC   C    --C g   c 
   ACCCGUAGA  CGA CUUG   G ggc u
   |||||||||  ||| ||||   | |||  
   ugggugucu  gcu gaac   c ccg u
guc         ga   c    aca g   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 105400925-105400984 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-99b

Accession MIMAT0006607
Description Canis familiaris cfa-miR-99b mature miRNA
Sequence 1 - CACCCGUAGAACCGACCUUGCG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415