miRBase entry: cfa-mir-196b

Stem-loop cfa-mir-196b


Accession
MI0008016
Description
Canis familiaris cfa-mir-196b precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

UAGGUAGUUUCCUGUUGUUGGGAuccaccuuucucucgacagcacgacacugccuuca
.(((((((.((.(((((((((((..........))))))))))).)).)))))))...

Structure
--U       U  C           ucca 
   AGGUAGU UC UGUUGUUGGGA    c
   ||||||| || |||||||||||     
   uccguca ag acgacagcucu    c
acu       c  c           cuuu 


Annotation confidence Not enough data
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Genome context
chr14: 40344005-40344062 [-]

Database links

Mature cfa-miR-196b

Accession MIMAT0006620
Description Canis familiaris cfa-miR-196b mature miRNA
Sequence 1 - UAGGUAGUUUCCUGUUGUUGGGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415