miRBase entry: cfa-mir-135a-2

Stem-loop cfa-mir-135a-2


Accession
MI0008025
Description
Canis familiaris cfa-mir-135a-2 precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

uUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAA
(((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))..

Structure
--           U            u g a 
  uUAUGGCUUUU AUUCCUAUGUGA a u a
  ||||||||||| |||||||||||| | | u
  AGUACCGAAGG UAGGGAUGUacu u a a
AA           -            c g a 


Annotation confidence Not enough data
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Genome context
chr15: 37181419-37181480 [+]

Database links

Mature cfa-miR-135a-5p

Accession MIMAT0010196
Description Canis familiaris cfa-miR-135a-5p mature miRNA
Sequence 2 - UAUGGCUUUUUAUUCCUAUGUGA - 24
Evidence not_experimental

Mature cfa-miR-135a-3p

Accession MIMAT0006628
Description Canis familiaris cfa-miR-135a-3p mature miRNA
Sequence 41 - UGUAGGGAUGGAAGCCAUGAAA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415