miRBase entry: cfa-mir-24-2

Stem-loop cfa-mir-24-2


Accession
MI0008041
Description
Canis familiaris cfa-mir-24-2 precursor miRNA
Gene family
MIPF0000041; mir-24


Sequence

cgugccuacugagcugaaacacaguugauuugugcagacUGGCUCAGUUCAGCAGGAACAGG
.((.(((.(((((((((....(((((..........)))))..))))))))).))).))...

Structure
--c  g   a         aaca     gauu 
   gu ccu cugagcuga    caguu    u
   || ||| |||||||||    |||||     
   CA GGA GACUUGACU    GUcag    g
GGA  A   C         --CG     acgu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr20: 48620684-48620745 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-24

Accession MIMAT0006614
Description Canis familiaris cfa-miR-24 mature miRNA
Sequence 40 - UGGCUCAGUUCAGCAGGAACAGG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415