miRBase entry: cfa-mir-138b

Stem-loop cfa-mir-138b


Accession
MI0008047
Description
Canis familiaris cfa-mir-138b precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

AGCUGGUGUUGUGAAUCAUGCCGAcgagcagcgcauccucuuacccggcuauuucacgacaccaggguu
..(((((((((((((....((((..(((.((......)))))...))))...)))))))))))))....

Structure
--AG             UCAU    -Ac   c  cg 
    CUGGUGUUGUGAA    GCCG   gag ag  c
    |||||||||||||    ||||   ||| ||   
    gaccacagcacuu    cggc   uuc uc  a
uugg             -uau    cca   -  cu 


Annotation confidence Not enough data
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Genome context
chr2: 59454083-59454151 [-]

Database links

Mature cfa-miR-138b

Accession MIMAT0006646
Description Canis familiaris cfa-miR-138b mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAUGCCGA - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415