miRBase entry: cfa-mir-17

Stem-loop cfa-mir-17

Accession

MI0008050

Description

Canis familiaris cfa-mir-17 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

caaagugcuuacagugcagguagugauaugugcaucuACUGCAGUGAAGGCACUUGUAG
..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))....

Structure

--ca        a  g     g   -  au 
    aagugcuu ca ugcag uag ug  a
    |||||||| || ||||| ||| ||  u
    UUCACGGA GU ACGUC Auc ac  g
GAUG        A  G     -   u  gu

Annotation confidence Not enough data

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Genome context

chr22: 42478013-42478071 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-17

Accession	MIMAT0006649
Description	Canis familiaris cfa-miR-17 mature miRNA
Sequence	38 - ACUGCAGUGAAGGCACUUGUAG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415