miRBase entry: cfa-mir-92a-1

Stem-loop cfa-mir-92a-1


Accession
MI0008055
Description
Canis familiaris cfa-mir-92a-1 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

agguugggaucgguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGU
((((((((((.(((.(((((((((((......)))))))))))))).))))))))))..

Structure
--          c   u           uu 
  agguugggau ggu gcaaugcugug  u
  |||||||||| ||| |||||||||||   
  UCCGGCCCUG UCA CGUUAUgguau  c
UG          U   -           gu 


Annotation confidence Not enough data
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Genome context
chr22: 42478714-42478772 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-92a

Accession MIMAT0006653
Description Canis familiaris cfa-miR-92a mature miRNA
Sequence 38 - UAUUGCACUUGUCCCGGCCUGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415