miRBase entry: cfa-mir-138a

Stem-loop cfa-mir-138a


Accession
MI0008056
Description
Canis familiaris cfa-mir-138a precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

AGCUGGUGUUGUGAAUCAGGCCGuugccaaucagagaacggcuacuucacaacaccaggguc
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))....

Structure
--AG             UCA       gc a 
    CUGGUGUUGUGAA   GGCCGuu  c a
    |||||||||||||   |||||||  | u
    gaccacaacacuu   ucggcaa  g c
cugg             -ca       ga a 


Annotation confidence Not enough data
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Genome context
chr23: 2223136-2223197 [-]

Database links

Mature cfa-miR-138a

Accession MIMAT0006654
Description Canis familiaris cfa-miR-138a mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415