miRBase entry: cfa-mir-1-1

Stem-loop cfa-mir-1-1


Accession
MI0008060
Description
Canis familiaris cfa-mir-1-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

cauacuucuuuauaugcccauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUA
(((((((((((((((..((((((((.....)))...))))).)))))))))))))))..

Structure
--               gc     ---   a 
  cauacuucuuuauau  ccaua   ugg c
  |||||||||||||||  |||||   ||| c
  GUAUGAAGAAAUGUA  GGUau   auc u
AU               -A     cga   g 


Annotation confidence Not enough data
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Genome context
chr24: 46481078-46481136 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-1-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-1

Accession MIMAT0006656
Description Canis familiaris cfa-miR-1 mature miRNA
Sequence 39 - UGGAAUGUAAAGAAGUAUGUA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415