miRBase entry: cfa-mir-200c

Stem-loop cfa-mir-200c


Accession
MI0008070
Description
Canis familiaris cfa-mir-200c precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

cgucuuacccagcaguguuugggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure
--    -      a        u   u   gg 
  cguc uuaccc gcaguguu ggg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 


Annotation confidence Not enough data
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Genome context
chr27: 38082097-38082159 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-200c

Accession MIMAT0006664
Description Canis familiaris cfa-miR-200c mature miRNA
Sequence 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415