miRBase entry: cfa-mir-15b

Stem-loop cfa-mir-15b


Accession
MI0008083
Description
Canis familiaris cfa-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

UAGCAGCACAUCAUGGUUUAcauacuacagucaagaugcgaaucauuauuugcugcucua
.(((((((.((.(((((((.(((.((.......))))).))))))).)).)))))))...

Structure
--U       C  C       A   a  ac 
   AGCAGCA AU AUGGUUU cau cu  a
   ||||||| || ||||||| ||| ||  g
   ucgucgu ua uacuaag gua ga  u
auc       u  u       c   -  ac 


Annotation confidence Not enough data
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Genome context
chr34: 26460663-26460722 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-15b

Accession MIMAT0006676
Description Canis familiaris cfa-miR-15b mature miRNA
Sequence 1 - UAGCAGCACAUCAUGGUUUA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415