miRBase entry: cfa-mir-34c

Stem-loop cfa-mir-34c


Accession
MI0008106
Description
Canis familiaris cfa-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

AGGCAGUGUAGUUAGCUGAUUGCuaauaguaccaaucacuaaccacacggccagg
.(((.((((.(((((.((((((.((....)).))))))))))).)))).)))...

Structure
--A   A    A     C      C  a 
   GGC GUGU GUUAG UGAUUG ua u
   ||| |||| ||||| |||||| ||  
   ccg caca caauc acuaac au a
gga   g    c     -      c  g 


Annotation confidence Not enough data
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Genome context
chr5: 21558106-21558160 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-34c

Accession MIMAT0006693
Description Canis familiaris cfa-miR-34c mature miRNA
Sequence 1 - AGGCAGUGUAGUUAGCUGAUUGC - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415