miRBase entry: cfa-mir-93

Stem-loop cfa-mir-93


Accession
MI0008110
Description
Canis familiaris cfa-mir-93 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

CAAAGUGCUGUUCGUGCAGGUAGugugauuaccugaccuacugcugagcuagcacuucccg
..((((((((((((.((((.(((.((.(.....).)))))))))))))).)))))))....

Structure
--CA       -     U    G   u  g u 
    AAGUGCU GUUCG GCAG UAG gu a u
    ||||||| ||||| |||| ||| || | a
    uucacga cgagu cguc auc ca u c
gccc       u     -    -   -  g c 


Annotation confidence Not enough data
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Genome context
chr6: 9498780-9498840 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-93

Accession MIMAT0006696
Description Canis familiaris cfa-miR-93 mature miRNA
Sequence 1 - CAAAGUGCUGUUCGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415