miRBase entry: cfa-mir-25

Stem-loop cfa-mir-25


Accession
MI0008111
Description
Canis familiaris cfa-mir-25 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

aggcggagacuugggcaauugcuggacgcugcccgcgCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.((((((((.((......)).))).))))).)..))))).))))..

Structure
--    g     uu g     -   u  ac 
  aggc gagac  g gcaau ugc gg  g
  |||| |||||  | ||||| ||| ||   
  UCUG CUCUG  C CGUUA gcg cc  c
AG    G     UU A     C   c  gu 


Annotation confidence Not enough data
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Genome context
chr6: 9498993-9499051 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-25

Accession MIMAT0006697
Description Canis familiaris cfa-miR-25 mature miRNA
Sequence 38 - CAUUGCACUUGUCUCGGUCUGA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415