miRBase entry: cfa-mir-197

Stem-loop cfa-mir-197


Accession
MI0008112
Description
Canis familiaris cfa-mir-197 precursor miRNA
Gene family
MIPF0000123; mir-197


Sequence

cggguagagagggcagugggagguaagagcucuucacccUUCACCACCUUCUCCACCCAGC
.((((.(((((((..(((((.((((((....))).))).)))))..))))))).))))...

Structure
--c    a       ca     a   -   a 
   gggu gagaggg  guggg ggu aag g
   |||| |||||||  ||||| ||| |||  
   CCCA CUCUUCC  CACUU cca uuc c
CGA    C       AC     c   c   u 


Annotation confidence Not enough data
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Genome context
chr6: 42271719-42271779 [-]

Database links

Mature cfa-miR-197

Accession MIMAT0006698
Description Canis familiaris cfa-miR-197 mature miRNA
Sequence 40 - UUCACCACCUUCUCCACCCAGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415