miRBase entry: cfa-mir-342

Stem-loop cfa-mir-342


Accession
MI0008128
Description
Canis familiaris cfa-mir-342 precursor miRNA
Gene family
MIPF0000190; mir-342


Sequence

gggugcuaucugugauugagggacauggcaaauagaauugUCUCACACAGAAAUCGCACCCGU
((((((..((((((.....((((((...(.....)...)))))).))))))....))))))..

Structure
--      --ua      auuga      ugg a 
  gggugc    ucugug     gggaca   c a
  ||||||    ||||||     ||||||   | a
  CCCACG    AGACAC     CUCUgu   g u
UG      CUAA      ----A      uaa a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 68424656-68424718 [+]

Database links

Mature cfa-miR-342

Accession MIMAT0006709
Description Canis familiaris cfa-miR-342 mature miRNA
Sequence 41 - UCUCACACAGAAAUCGCACCCGU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415