miRBase entry: cfa-mir-493

Stem-loop cfa-mir-493


Accession
MI0008130
Description
Canis familiaris cfa-mir-493 precursor miRNA
Gene family
MIPF0000230; mir-493


Sequence

uguacaugguaggcuuucauucauucguuugcacauucggUGAAGGUCUACUGUGUGCCAG
.((((((((((((((((((((.................))))))))))))))))))))...

Structure
--u                    cauucgu 
   guacaugguaggcuuucauu       u
   ||||||||||||||||||||       u
   CGUGUGUCAUCUGGAAGUgg       g
GAC                    cuuacac 


Annotation confidence Not enough data
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Genome context
chr8: 69094352-69094412 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-493
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-493

Accession MIMAT0006711
Description Canis familiaris cfa-miR-493 mature miRNA
Sequence 41 - UGAAGGUCUACUGUGUGCCAG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415