miRBase entry: cfa-mir-410

Stem-loop cfa-mir-410


Accession
MI0008149
Description
Canis familiaris cfa-mir-410 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

agguugucugugaugaguucgcuuuauuaaugccgAAUAUAACACAGAUGGCCUGU
((((((((((((.((.((((((.........).))))).)).))))))))))))..

Structure
--            a  a     - uuu 
  agguugucugug ug guucg c   a
  |||||||||||| || ||||| |   u
  UCCGGUAGACAC AU UAAgc g   u
UG            A  A     c uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 69294377-69294432 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cfa-mir-410
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-410

Accession MIMAT0006728
Description Canis familiaris cfa-miR-410 mature miRNA
Sequence 36 - AAUAUAACACAGAUGGCCUGU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415