miRBase entry: cfa-mir-181b-2

Stem-loop cfa-mir-181b-2


Accession
MI0008153
Description
Canis familiaris cfa-mir-181b-2 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

AACAUUCAUUGCUGUCGGUGgguuugagucugaaucaacucacugaucaaugaaugcaaa
..(((((((((..(((((((((((.((.......))))))))))))))))))))))....

Structure
--AA         CU           u  gu 
    CAUUCAUUG  GUCGGUGgguu ga  c
    |||||||||  ||||||||||| ||  u
    guaaguaac  uagucacucaa cu  g
aaac         --           -  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 58301314-58301373 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-181b

Accession MIMAT0006708
Description Canis familiaris cfa-miR-181b mature miRNA
Sequence 1 - AACAUUCAUUGCUGUCGGUG - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415