miRBase entry: cfa-mir-502

Stem-loop cfa-mir-502


Accession
MI0008187
Description
Canis familiaris cfa-mir-502 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

aauccuugcuaucugggugcuagugcugucucaaugcAAUGCACCUGGGCAAGGAUUCA
(((((((((...((((((((...(((.........)))..)))))))))))))))))..

Structure
--         uau        uag   ugu 
  aauccuugc   cugggugc   ugc   c
  |||||||||   ||||||||   |||   u
  UUAGGAACG   GGUCCACG   Acg   c
AC         ---        -UA   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 42785601-42785659 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cfa-mir-502
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-502

Accession MIMAT0006761
Description Canis familiaris cfa-miR-502 mature miRNA
Sequence 38 - AAUGCACCUGGGCAAGGAUUCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415