Stem-loop sequence gga-mir-216b

Accession

MI0008205 (change log)

Description

Gallus gallus miR-216b stem-loop

Gene family

MIPF0000054; mir-216

Stem-loop

   gaguca    c  -    a          c  a     ---  u  u 
5'       caga ug ggaa ucucugcagg aa uguga   ug cu u
         |||| || |||| |||||||||| || |||||   || ||  
3'       gucu ac ucuu agagaugucc uu acacu   ac ga a
   -cuacg    a  a    -          a  a     cua  -  u 

Deep sequencing

467 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 323483-323571 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-216b

• gga-mir-216c: chr3: 323485-323570 [+]
• gga-mir-216b: chr3: 323483-323571 [-]
• gga-mir-216a: chr3: 318076-318181 [-]
• gga-mir-217: chr3: 315408-315514 [-]

Database links

• EntrezGene:MIR216B
• miRBase Tracker:MI0008205

Mature sequence gga-miR-216b

• Accession: MIMAT0007748
• Sequence: 16 - aaaucucugcaggcaaauguga - 37
• Deep sequencing: 461 reads, 5 experiments
• Evidence: experimental; Northern [1]
• Predicted targets:
  • TargetScanVert:gga-miR-216b
  • miRDB:gga-miR-216b

References

1. PMID:18511220 "Identification of novel chicken microRNAs and analysis of their genomic organization" Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH Gene. 418:34-40(2008).