miRBase entry: ssc-mir-34a

Stem-loop ssc-mir-34a


Accession
MI0008216
Description
Sus scrofa ssc-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
15 open access papers mention ssc-mir-34a
(74 sentences)

Sequence

11 reads, 16 reads per million, 5 experiments
uuucuuUGGCAGUGUCUUAGCUGGUUGUugugaguaauagcaaaggaagcaaucagcagcauccugcccuagaaca
.((((..(((((.(.....((((((((((..................)))))))))).....))))))..))))..

Structure
-u    uU     U UCUUA          gugaguaa 
  uucu  GGCAG G     GCUGGUUGUu        u
  ||||  ||||| |     ||||||||||         
  aaga  ccguc c     cgacuaacga        a
ac    uc     - uacga          aggaaacg 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssc-miR-34a

Accession MIMAT0007757
Description Sus scrofa ssc-miR-34a mature miRNA
Sequence 7 - UGGCAGUGUCUUAGCUGGUUGU - 28
Evidence experimental
cloned [1-2], Illumina [3]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100