miRBase entry: osa-MIR1857

Stem-loop osa-MIR1857


Accession
MI0008234
Description
Oryza sativa osa-MIR1857 precursor miRNA

Literature search
3 open access papers mention osa-MIR1857
(8 sentences)

Sequence

39 reads, 25 reads per million, 2 experiments
guuuuuauccUGGUUUUUUUGGAGCAUGAGGuuaucucucaguuuuuccguguccaaaauaaaaggacaaaaacuguucuugaaaaccgagagauaaccUCAUGCUCCAAGAAAACCAGGauaaaaaauu
.(((((((((((((((((((((((((((((((((((((((.((((((...(((((.........)))))............)))))).)))))))))))))))))))))))))))))))))))))))...

Structure
--g                                       a      ---------ccg     aaa 
   uuuuuauccUGGUUUUUUUGGAGCAUGAGGuuaucucuc guuuuu            ugucc   a
   ||||||||||||||||||||||||||||||||||||||| ||||||            |||||   u
   aaaaauaGGACCAAAAGAACCUCGUACUccaauagagag caaaag            acagg   a
uua                                       c      uucuugucaaaa     aaa 


Annotation confidence Not enough data
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Genome context
Chr11: 2733902-2734031 [+]

Database links

Mature osa-miR1857-5p

Accession MIMAT0007779
Description Oryza sativa osa-miR1857-5p mature miRNA
Sequence 11 - UGGUUUUUUUGGAGCAUGAGG - 31
Evidence experimental
454 [1], Illumina [2]
Database links

Mature osa-miR1857-3p

Accession MIMAT0007780
Description Oryza sativa osa-miR1857-3p mature miRNA
Sequence 100 - UCAUGCUCCAAGAAAACCAGG - 120
Evidence experimental
454 [1], Illumina [2]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465