miRBase entry: osa-MIR1428b

Stem-loop osa-MIR1428b


Accession
MI0008235
Description
Oryza sativa osa-MIR1428b precursor miRNA
Gene family
MIPF0000575; MIR1428

Literature search
5 open access papers mention osa-MIR1428b
(20 sentences)

Sequence

4 reads, 2 reads per million, 2 experiments
gguuagugcgcuuugcgaauucacgggucuuaucuugugguaugaacugaguacguaaugauuuauggugcauauugggggcuuaccaUAAGAUAAUGCCAUGAAUUCGcaaagcguucaaacc
((((.(.((((((((((((((((..(((.(((((((((((((.(..((.(((((((((....))))).....)))).))..).))))))))))))).))).)))))))))))))))).).))))

Structure
    a u                cg   c             u aa  g    -----     u 
gguu g gcgcuuugcgaauuca  ggu uuaucuuguggua g  cu agua     cguaa g
|||| | ||||||||||||||||  ||| ||||||||||||| |  || ||||     |||||  
ccaa c ugcgaaacGCUUAAGU  CCG AAUAGAAUaccau c  gg uuau     guauu a
    a u                -A   U             u gg  g    acgug     u 


Annotation confidence Not enough data
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Genome context
Chr1: 25390346-25390469 [+]

Database links

Mature osa-miR1428b

Accession MIMAT0007781
Description Oryza sativa osa-miR1428b mature miRNA
Sequence 89 - UAAGAUAAUGCCAUGAAUUCG - 109
Evidence experimental
454 [1]

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465