miRBase entry: osa-MIR1861f

Stem-loop osa-MIR1861f


Accession
MI0008252
Description
Oryza sativa osa-MIR1861f precursor miRNA
Gene family
MIPF0000567; MIR1861

Literature search
8 open access papers mention osa-MIR1861f
(47 sentences)

Sequence

98 reads, 73 reads per million, 2 experiments
ugcguauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguuguugaacuugcucuauguuguucguucacccacuauucgguuccugucccaagaucgagucuaugaauauaca
((.((((((.(((((.((((((((.(((((((((((((((((.(.(((((..((........))..))))).).))))))))))))))))).)))))))).))))).)))))).))

Structure
  c      u     c        A                 u u     uu  ucu 
ug guauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu g ugaac  gc   a
|| |||||| ||||| |||||||| ||||||||||||||||| | |||||  ||    
ac uauaag aucug gcuagaac cuguccuuggcuuauca c acuug  ug   u
  a      u     a        c                 c c     cu  uug 


Annotation confidence Not enough data
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Genome context
Chr5: 18668398-18668513 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1861f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1861f

Accession MIMAT0007801
Description Oryza sativa osa-miR1861f mature miRNA
Sequence 17 - CGAUCUUGAGGCAGGAACUGAG - 38
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465