miRBase entry: osa-MIR1861l

Stem-loop osa-MIR1861l


Accession
MI0008258
Description
Oryza sativa osa-MIR1861l precursor miRNA
Gene family
MIPF0000567; MIR1861

Literature search
8 open access papers mention osa-MIR1861l
(47 sentences)

Sequence

99 reads, 74 reads per million, 2 experiments
ucguguugcauauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguuggugaacucgcucuauguuguucauucacucgcgacacgguuccugucccaagaucgggucugugaauauacaaauguga
.(((.(((.((((((.((((((((((((((.(((((((((((.((.((.((((((...((........))...)))))).)).)).))))))))))).)))))))))))))).)))))).))))))...

Structure
--u   g   c      u              A           A  a  u      cuc  ucu 
   cgu uug auauuc uaggccCGAUCUUG GGCAGGAACUG Gu gu ggugaa   gc   a
   ||| ||| |||||| |||||||||||||| ||||||||||| || || ||||||   ||    
   gua aac uauaag gucugggcuagaac cuguccuuggc ca cg ucacuu   ug   u
agu   -   a      u              c           a  g  c      acu  uug 


Annotation confidence Not enough data
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Genome context
Chr9: 13532426-13532554 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from osa-MIR1861l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1861l

Accession MIMAT0007807
Description Oryza sativa osa-miR1861l mature miRNA
Sequence 23 - CGAUCUUGAGGCAGGAACUGAG - 44
Evidence experimental
454 [1], Illumina [2]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207