miRBase entry: osa-MIR1870

Stem-loop osa-MIR1870


Accession
MI0008273
Description
Oryza sativa osa-MIR1870 precursor miRNA

Literature search
3 open access papers mention osa-MIR1870
(8 sentences)

Sequence

3208 reads, 2264 reads per million, 2 experiments
uagugucaaaguaauggaggauuugggaaauaaacugcguucaUGCUGAAUUAGACCUAGUGGGCAUuuauacaucacaacacaugguacuguugcccuuuccuuuuucuagccuuaguguugugaucuauauaugcccUUUAGGGCUAAUUCAGCAUGAACAuaguuuauucuccauuccucaaaucauccauuacuuuugacacuua
.(((((((((((((((((.((((((((((((((((((.((((((((((((((((.(((((.((((((.((((.((((((((((..(((.......................)))...)))))))))).)))).)))))).))))).)))))))))))))))).))))))))......)))).)))))).)))))))).)))))))))..

Structure
-u         -        g      -    ------        c                A     U      u    c          -au   acuguugccc 
  agugucaaa guaaugga gauuug ggaa      auaaacug guucaUGCUGAAUUAG CCUAG GGGCAU uaua aucacaacac   ggu          u
  ||||||||| |||||||| |||||| ||||      |||||||| |||||||||||||||| ||||| |||||| |||| ||||||||||   |||          u
  ucacaguuu cauuaccu cuaaac ccuu      uauuugau CAAGUACGACUUAAUC GGAUU cccgua auau uaguguugug   ccg          u
au         u        a      u    accucu        A                G     U      u    c          auu   aucuuuuucc 


Annotation confidence Not enough data
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Genome context
Chr6: 21164755-21164963 [+]

Database links

Mature osa-miR1870-5p

Accession MIMAT0007823
Description Oryza sativa osa-miR1870-5p mature miRNA
Sequence 44 - UGCUGAAUUAGACCUAGUGGGCAU - 67
Evidence experimental
454 [1], Illumina [2]
Database links

Mature osa-miR1870-3p

Accession MIMAT0015270
Description Oryza sativa osa-miR1870-3p mature miRNA
Sequence 140 - UUUAGGGCUAAUUCAGCAUGAACA - 163
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465