miRBase entry: osa-MIR1873

Stem-loop osa-MIR1873


Accession
MI0008276
Description
Oryza sativa osa-MIR1873 precursor miRNA

Literature search
5 open access papers mention osa-MIR1873
(6 sentences)

Sequence

92 reads, 62 reads per million, 2 experiments
uagauuaugaaccUCAACAUGGUAUCAGAGCUGGAAGuccuaaaguugacaucaugauagccugacgaugguggagaccaugauaagcugauaccauguauuuugccgacauuguguuucuccaagauugugcuacaucacaaacuuagaaaaacuuagaacuucuagcucugauaccauguugaguuuuauggccu
.((.(((((((.((((((((((((((((((((((((((.((((((((......(((.((((...(((((..((((((.((((((..((.(((((...)))))..))....))))))..))))))..))))))))))))....)))).........)))).)))))))))))))))))))))))))).))))))).))

Structure
u  a       c                          c    ---------    gacauc   a    cug     gg      -c      --aa  -u     c 
 ag uuaugaa cUCAACAUGGUAUCAGAGCUGGAAGu cuaa         aguu      aug uagc   acgau  uggaga  caugau    gc  gauac  
 || ||||||| |||||||||||||||||||||||||| ||||         ||||      ||| ||||   |||||  ||||||  ||||||    ||  ||||| a
 uc gguauuu gaguuguaccauagucucgaucuuca gauu         ucaa      uac aucg   uguua  accucu  guguua    cg  uuaug  
-  c       u                          a    caaaaagau    --acac   -    ---     ga      uu      cagc  uu     u 


Annotation confidence Not enough data
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Genome context
Chr7: 12755913-12756109 [+]

Database links

Mature osa-miR1873

Accession MIMAT0007826
Description Oryza sativa osa-miR1873 mature miRNA
Sequence 14 - UCAACAUGGUAUCAGAGCUGGAAG - 37
Evidence experimental
454 [1], Illumina [2]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465