miRBase entry: osa-MIR1881

Stem-loop osa-MIR1881


Accession
MI0008287
Description
Oryza sativa osa-MIR1881 precursor miRNA

Literature search
2 open access papers mention osa-MIR1881
(2 sentences)

Sequence

36 reads, 27 reads per million, 2 experiments
aaccaaguuaaaaugcucauagguaugaacaagcaucAAUGUUAUUGUAGCGUGGUGGUGUgaccucugugcacguaagcuugaggcagcaaguucgacuccuucaaaaggaagauuuguaccgcuggggaagugccagaagaaaagaacaaggaagacuugcuagcaggacaaaaggacgguaaacuuggaaaaaaaaagguccagaagaaaagaacaaagaagaacugcuugaaggagucgaacuugcuaccucaagcuugcgugcacauaggucacaccacuacgcuacaauaacguugaugcuuguucagaccugugagcauuuuaacuugguu
((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((.((((((((((((((((((((..((....(((((.(((((((..((((.((...............))...)))).))))).))))))).((((.....................))))......................))..)))))))))))))))))))).))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))

Structure
                        a                                         c                   c                    aa  ------------------------------------------------aaga     a  -     gg    --g  agaaga 
aaccaaguuaaaaugcucauaggu ugaacaagcaucAAUGUUAUUGUAGCGUGGUGGUGUgaccu ugugcacguaagcuugagg agcaaguucgacuccuucaa  gg                                                    uuugu cc gcugg  aagu   cc      a
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||                                                    ||||| || |||||  ||||   ||      a
uugguucaauuuuacgagugucca acuuguucguaguugcaauaacaucgcaucaccacacugga acacgugcguucgaacucc ucguucaagcugaggaaguu  uc                                                    aaaca gg cgauc  uuca   gg      a
                        g                                         u                   a                    cg  aagaagaaacaagaaaagaagaccuggaaaaaaaaagguucaaauggcagga     -  a     -g    gaa  aacaag 


Annotation confidence Not enough data
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Genome context
Chr12: 5725922-5726259 [+]

Database links

Mature osa-miR1881

Accession MIMAT0007838
Description Oryza sativa osa-miR1881 mature miRNA
Sequence 38 - AAUGUUAUUGUAGCGUGGUGGUGU - 61
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465