miRBase entry: osa-MIR812g

Stem-loop osa-MIR812g


Accession
MI0008296
Description
Oryza sativa osa-MIR812g precursor miRNA
Gene family
MIPF0000345; MIR812

Literature search
11 open access papers mention osa-MIR812g
(19 sentences)

Sequence

741 reads, 342 reads per million, 2 experiments
uuccgauguaaucccucuguuccauuuuaagugcagccaugguuuuacgcgcucaacuuuaaucguccgucuuauuuaaaaaaaauuaaaaacauaagucaugaguaaaguauacuauucauauuuuauuaucucauaacaauaaaaauacuaauuauaaaaaaauuuaaauAAGACGGAUGAUUAAAGUUGGACAuggaaacucauaguuguacuuaaaaugggacgaagggaguaucauu
....((((...(((((.((((((((((((((((((((.((((((((.((.(.((((((((((((((((((((((((((((.................((.(((((((((((((.......))))))))....))))).)).((((.........)))).......)))))))))))))))))))))))))))).).))))))).))).)))))))))))))))))))).)))))....))))

Structure
uucc    -uaa     c                    c   -     a  c c                            --------aaaaauuaaaaacauaa  c     ----        ac 
    gaug    ucccu uguuccauuuuaagugcagc aug guuuu cg g ucaacuuuaaucguccgucuuauuuaaa                         gu augag    uaaaguau  u
    ||||    ||||| |||||||||||||||||||| ||| ||||| || | ||||||||||||||||||||||||||||                         || |||||    ||||||||  a
    uuac    aggga gcaggguaaaauucauguug uac caaag gu C GGUUGAAAUUAGUAGGCAGAAuaaauuu                         ca uacuc    auuuuaua  u
----    uaug     a                    a   u     -  A A                            aaaaaaauauuaaucauaaaaauaa  a     uauu        cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr3: 5230013-5230254 [+]

Database links

Mature osa-miR812g

Accession MIMAT0007847
Description Oryza sativa osa-miR812g mature miRNA
Sequence 173 - AAGACGGAUGAUUAAAGUUGGACA - 196
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465